PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.059580.2
Common NameCsa_3G088430, LOC101220471
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 438aa    MW: 48038.8 Da    PI: 6.8037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.059580.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.2e-063243621154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cucsa.059580.2 324 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 362
                     5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-7323367No hitNo description
SuperFamilySSF474591.31E-11323377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0037324368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-9327369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAEEFQSSGN WWEAASRISP SSSSITTFVD HSDSAAAASD PNLHIMGLGL DWNQPLLGGG  60
EKAAEGSFRS MLQPDNMNLN MEETGQQQQQ QQQEQQQQQI QWMRSEKLYS GESPATDFKP  120
INRGFSLDHH HHHHHHHHQA QPQFSSPSHY SSGDSAVTSY PIDTNANLYG NSATLLQGLL  180
AAGGEQQQQQ QQQISMGMNF PYNSHFGMNS GELMTGGASW SPSKVPPYLR NSPPKAGAGG  240
NPHSQLQFSN NTAFWNASDM KEVRPSYFAP SYNAAAGFTE KSKNISEVGD SVTTKKSGND  300
NNQQSAAAKR PRNETPSPLP AFKVRKEKMG DRITALQQLV SPFGKTDTAS VLSEAIEYIK  360
FLHEQVSVLS TPYLKSGAVV QQQHQQQRNE KSVKEGEGGK QDLRSRGLCL VPVSSTFPVT  420
HETTVDFWTP TFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650539.10.0PREDICTED: transcription factor bHLH123 isoform X2
TrEMBLA0A0A0L5640.0A0A0A0L564_CUCSA; Uncharacterized protein
STRINGGLYMA12G34490.11e-130(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-65bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]